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19 T.W. Alexander Drive P.O.Box 14006 Research Triangle Park, NC 27709-4006 Tel: 919.685.9350 Fax: 919.685.9360 info@samsi.info |
Basic information
- Part of the 2009 SAMSI Program on Stochastic Dynamics
- Meeting time/location: Wednesday, 09:00am - 10:45am, SAMSI, Room 203
- Leaders: Pierre Gremaud, Peter Kramer, and Peter Mucha
- Webmaster: Xueying Wang
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Announcements
- No meeting on October 28
- SAMSI workshop on Self-Organization and Multiscale Mathematical Modeling of Active Biological Systems October 26-28
- Report of the networks epidemics group from Workshop on Molecular Motors, Neuron Models, and Epidemics on Networks by John Mcsweeney
Meeting activities
Clicking on a date will take you to that date on the Meeting Summary page.
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| Date | Topics and Readings | |
|---|---|---|
| 05/26/2010 | Mandi T.: moment closure on SIS models. | |
| 04/28/2010 | Bruce Rogers: numerical simulations of SIS epidemics on various networks John Mcsweeney: analysis of SIS models on a specific cavemen graph | |
| 04/21/2010 | Group discussion of the past workshop and future projects | |
| 04/07/2010 | Mandi Traud: Networks and Brain models | |
| 03/31/2010 | Group discussion | |
| 03/24/2010 | Mandi Traud and Katie Newhall: progress on stochastic SISR models | |
| 03/17/2010 | John Mcsweeney: simulations of an SIS infection on a ring graph Cindy Greenwood: the reduction of SIRS PAs to SIS PAs | |
| 03/10/2010 | John Mcsweeney: analysis of SIS model on some specific networks Xueying Wang: Pairwise closure approximation comparison Katie Newhall: discretizing neuronal SISR models on network | notes about closure approximations Comparison pdf |
| 03/03/2010 | ||
| 02/23/2010 | Xueying Wang: bifurcation diagrams of deterministic SIS dynamical systems John Mcsweeney: simulations of SIS dynamics Group discussion on epidemic modeling and analysis | |
| 02/17/2010 | Katie Newhall: stochastic SISR models on network Mandi Traud: moment closure approximation to SIS dyamics Group discussion on epidemic modeling | |
| 02/17/2010 | Stochastic epidemic modeling | |
| 01/27/2010 | John Mcsweeney: simulations of SIS dynamics on a “caveman”-type graph Group discussion on numerical schemes for simulating epidemics across various platforms | G. Rozhnova and A. Nunes recent work [pdf][pdf][pdf][pdf]. Also some figures comparing Eames and Keeling eqn's to micros simspdf |
| 01/20/2010 | Gillian Sanders: Modeling costs and benefits of HPV vaccination implementation strategies | |
| 01/13/2010 | Progress report | |
| 12/02/2009 | More on Eames and Keeling moment closures | some notes pdf about simulating Eames and Keeling pairwise approximation model |
| 11/25/2009 | No meeting | Thanksgiving Holiday |
| 11/18/2009 | Pamela Fuller and Toni Wagner talked about HPV on social dynamic network John Mcsweeney summarized the typo in Dangerfield and Keeling's paper | |
| 11/11/2009 | Bruce Rogers and Katie Newhall summarized their ideas and results on epidemic problems | |
| 11/04/2009 | progress report and discussion | |
| 10/28/2009 | No meeting | SAMSI workshop October 26-28 |
| 10/21/2009 | Defined stochastic epidemic models problem | if interested, please edit the contents! |
| 10/21/2009 | John Mcsweeney: kinetic models Cindy Greenwood: stochastic epidemic models | |
| 10/14/2009 | Peter Mucha: Modeling dynamic and network heterogeneities |
|
| 10/07/2009 | Badal Joshi: Hebbian learning Anuj Mubayi: modeling for alcohol addiction | |
| 09/30/2009 | Network software tutorial: Badal Joshi Hebbian learning | |
| 09/23/2009 | James Nolen: kinetic models Group discussion of kinetic models and directions to work on | |
| 09/16/2009 | Anuj Mubayi: social addiction dynamics James Nolen: kinetic models (to be continued next week) | |
| 09/09/2009 | Kevin Lin: networks of dynamical systems and information encoding Peter Mucha: an overview of networks | |
| 09/03/2009 | Group introduction and organizational meeting |
Group members
E-mail alias for the group is sd-net AT samsi.info.
| Name | Affiliation | E-mail address |
|---|---|---|
| Amarjit Budhiraja | amarjit AT unc DOT edu | |
| Enrico Capobianco | enrico.capobianco AT gmail DOT com | |
| Amogh Deshpande | addeshpa AT ncsu DOT edu | |
| Vanja Dukic | vanja AT uchicago DOT edu | |
| Luis Gordillo | luis.f.gordillo AT gmail DOT com | |
| Cindy Greenwood | pgreenw AT math DOT la DOT asu DOT edu | |
| Pierre Gremaud | gremaud AT ncsu DOT edu | |
| John Harlim | jharlim AT cims DOT nyu DOT edu | |
| Kazi Ito | kito AT math DOT ncsu DOT edu | |
| Badal Joshi | joshi AT math DOT duke DOT edu | |
| Peter Kramer | kramep AT rpi DOT edu | |
| Jaechoul Lee | jaechlee AT math DOT boisestate DOT edu | |
| Kevin Lin | klin AT math DOT arizona DOT edu | |
| Jon Mattingly | jon AT math DOT duke DOT edu | |
| Scott McKinley | mckinley AT math DOT duke DOT edu | |
| John McSweeney | mcsweeney AT samsi DOT info | |
| Anuj Mubayi | anujmubayi AT yahoo DOT com | |
| Peter Mucha | mucha AT unc DOT edu | |
| Katie Newhall | newhak AT rpi DOT edu | |
| James Nolen | nolen AT math DOT duke DOT edu | |
| Lea Popovic | lpopovic AT mathstat DOT concordia DOT ca | |
| Bruce Rogers | rogers AT mathpost DOT asu DOT edu | |
| Scott Schmidler | schmidler AT stat DOT duke DOT edu | |
| Rav Srinivasan | rav AT math DOT duke DOT edu | |
| Yi Sun | yisun AT cims DOT nyu DOT edu | |
| Rachel Thomas | rachel AT math DOT duke DOT edu | |
| Ilya Timofeyev | ilya AT math DOT uh DOT edu | |
| Anand Vidyashankar | anv4 AT cornell DOT edu | |
| Xueying Wang | xueying AT samsi DOT info | |
| Richard Yamada | yryamada AT umich DOT edu |
Reference list
Barhelemy, et al, Dynamical patterns of epidemic outbreaks in complex heterogeneous networks, J. Theoretical Biology vol 235 (2005) pp275-288. pdf
Joel C Miller, Spread of infectious disease through clustered populations, J. R. Soc. Interface 2009 6, 1121-1134. [pdf]
M Simões, M.M Telo da Gama and A Nunes, Stochastic fluctuations in epidemics on networks, J. R. Soc. Interface 2008 5, 555-566. [pdf]
Ganna Rozhnova and Ana Nunes, Cluster approximations for infection dynamics on random networks. [pdf]
Ganna Rozhnova and Ana Nunes, Population dynamics on random networks: simulations and analytical models. [pdf]
Ganna Rozhnova and Ana Nunes, SIRS dynamics on random networks: simulations and analytical models. [pdf]
Ganna Rozhnova and Ana Nunes, Fluctuations and oscillations in a simple epidemic model. [pdf]
Richard J. Braun et al. Applications of small-world network theory in alcohol epidemiology. Journal of Studies on Alcohol. July 2006 v67 i4 p591(9). [pdf]
Naoki Masuda and Norio Konno. Transmission of severe acute respiratory syndrome in dynamical small-world networks. Physical Review E 69, 031917(2004). [pdf]
Azmy S. Ackleh et al. Ecosystem modeling of college drinking: Parameter estimation and comparing models to data. Mathematical and Computer Modelling 50 (2009) 481-497. [pdf]
D. R Hunter et al.,statnet: Software tools for the representation, visualization, analysis and simulation of network data, Journal of statistical software,2008. [pdf]
M. S Handcock et al, ergm: A package to fit, simulate and diagnose exponential-family models for networks, Journal of Statistical Software,2008. [pdf]
G Kovacic, L Tao, AV Rangan and D Cai.Fokker-Planck description of conductance-based integrate-and-fire neuronal networks. Physical Review E, 2009. [pdf]
C.-Y. Liu and D. Q. Nykamp. A kinetic theory approach to capturing interneuronal correlation: The feedforward case. Journal of Computational Neuroscience, 26: 339-368, 2009. [pdf]
D. Q. Nykamp and D. Tranchina. Fast neural network simulations with population density methods. Neurocomputing. 32:487-492, 2000. [pdf]
Maxim S. Shkarayev et al, Architectural and functional connectivity in scale-free integrate-and-fire networks, 2009 [pdf]
Eric Kolaczyk's book: Statistical Analysis of Network Data, Springer, 2009
Mark Newman, The structure and function of complex networks, 2003. [pdf]
Lu et al, Impact of network topology on decision-making, 2009. [pdf]
Traud, Amanda L., Frost, Christina, Mucha, Peter, and Porter, Mason. Visualization of Communities in Networks, 2009. chaosviscomms.pdf millerinfectclusteredpops.pdf
Data sites
- Data site #1
Working groups dial-in & WebEx instructions
- Go to the email invitation that you received announcing the meeting, or go directly to WebEx: https://samsi.webex.com
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If you are having trouble with WebEx or the Teleconference line please contact Sue McDonald (sue AT samsi DOT info, 919-685-9359) or James Thomas (help AT samsi DOT info, 919-685-9307).
You can learn more about WebEx and take tutorials at http://university.webex.com.
