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Program on Algebraic Methods in Systems Biology and Statistics

Systems Biology Working Group

Meets: Wednesday, 12:30 - 2:30 in Room

Leaders: Reinhard Laubenbacher and Brandy Stigler
Webmasters: Megan Owen and Saeid Yasamin

Password Protected Site
Goals and Objectives
Working Papers/Drafts for Publication
Reference Materials

Announcements

 

Nov. 26 meeting cancelled due to Thanksgiving.

 

Meeting Activities

** Clicking on a date will take you to that date on the Meeting Summary page **

DATE

TOPICS & Readings

Notes

 

March 4, 2009

Heike Siebert: Analyzing Discrete Dynamical Systems Using Symbolic Steady States

 

January 28, 2009

Paola Vera-Licona: Inference of Brain Connectivity Networks

 

January 14, 2009

Eva Riccomagno: Three applications of algebraic statistics in experimental design

 

December 10, 2008

Gilles Gnacadja: Introducing complete networks of Reversible Binding Reactions: An effort to encompass certain networks ubiquitous in pharmacology

Abstract

Suggested Reading

November 19, 2008

Brandy Stigler: The connection between network inference and experimental design

Suggested reading

November 12, 2008

Discussion of research interests and open problems

Suggested reading

November 6, 2008

Gheorghe Craciun: Identifiability of biochemical reaction networks

Suggested reading

October 29, 2008

Brandy Stigler: Review of "How to infer gene networks from expression profiles"

 

October 22, 2008

Ian H. Dinwoodie: Reverse engineering binary maps

with tree classification

 

October 15, 2008

Elena S. Dimitrova: Discretization of biological data

 

 

October 8, 2008

A general, 3-part framework for considering statistical models

Suggested reading

October 1, 2008

Brandy Stigler: A brief review of recent papers in Network Inference

 

Suggested reading

 

 

 

 

 

 

 

Group Members

(email alias for the group is alg-net at samsi.info)

Name

Affiliation

Email Address

Brandon Barker

Cornell University

beb82@cornell.edu

Carsten Conradi

 

conradi@mpi-magdeburg.mpg.de

Alicia Dickenstein

 

alidick@dm.uba.ar

Elena Dimitrova

Clemson University

edimit@clemson.edu

Ian Dinwoodie

Duke University

ihd@stat.duke.edu

Mathias Drton

University of Chicago

drton@galton.uchicago.edu

Lee Falin

 

lee.falin@gmail.com

Stephen Fienberg

Carnegie Mellon University

fienberg@stat.cmu.edu

Thomas Friedrich

 

friedrich@math.fu-berlin.de

Cedric Genestet

Imperial College London

c.ginestet@imperial.ac.uk

Luis Garcia-Puente

Sam Houston State University

ldg005@shsu.edu

Gilles Gnacadja

Amgen

gnacadja@amgen.com

Richard Haney

Cellular Statistics

rhaney@cellularstatistics.com

Franziska Hinkelmann

Virginia Tech

fhinkel@vt.edu

Serkan Hosten

San Francisco State University

serkan@math.sfsu.edu

Abdul Salam Jarrah

Virginia Tech

ajarrah@vbi.vt.edu

Imre Risi Kondor

 

risi@gatsby.ucl.ac.uk

Reinhard Laubenbacher

Virginia Tech

reinhard@vbi.vt.edu

Tong Lee

 

lee.ezra@gmail.com

Shaowei Lin

Univ. of California-Berkeley

shaowei@math.berkeley.edu

Hugo Maruri-Aguilar

London School of Economics

H.Maruri-Aguilar@lse.ac.uk

Edwin O'Shea

 

edwin@math.cinvestav.mx

Megan Owen

Cornell University

mao29@cornell.edu

Mercedes Soledad Perez Millan

 

mercedes.s.pm@gmail.com

Dustin Reishus

University of Southern California

reishus@usc.edu

Anne Shiu

Univ. of California-Berkeley

annejls@math.berkeley.edu

Heike Siebert

 

siebert@mi.fu-berlin.de

Brandy Stigler

Ohio State University

bstigler@mbi.osu.edu

Seth Sullivant

Harvard University

seths@math.harvard.edu

Brett Tyler

Virginia Tech

bmtyler@vt.edu

Jung-Ying Tzeng

N.C. State University

jytzeng@stat.ncsu.edu

Carolina Uhler

Univ. of California-Berkeley

cuhler@stat.berkeley.edu

Alan Veliz-Cuba

Virginia Tech

alanavc@vt.edu

Benjamin Wells

N.C. State University

btwells@ncsu.edu

Henry Wynn

London School of Economics

H.Wynn@lse.ac.uk

Richard Yamata

University of Michigan

yryamada@umich.edu

Shantia Yarahmadian

Indiana University

syarahma@indiana.edu

Saeid Yasamin

 

syasamin@gmail.com

Yi Ming Zou

University of Wisconsin-Milwaukee

ymzou@uwm.edu

Or Zuk

M.I.T.

orzuk@broad.mit.edu

Reference List

·        Optimal design (provided by Richard Haney)




Data Sites

 

 

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This page updated on September 19, 2008 2:51 PM